6DEC image
Deposition Date 2018-05-11
Release Date 2018-10-24
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6DEC
Keywords:
Title:
Crystal structure of Bos taurus Arp2/3 complex binding with C-terminus of Homo sapiens SPIN90
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
4.60 Å
R-Value Free:
0.31
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 3
Gene (Uniprot):ACTR3
Chain IDs:A, I (auth: H)
Chain Length:418
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2
Gene (Uniprot):ACTR2
Chain IDs:B, J (auth: I)
Chain Length:394
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 1B
Gene (Uniprot):ARPC1B
Chain IDs:C, K (auth: J)
Chain Length:372
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 2
Gene (Uniprot):ARPC2
Chain IDs:D, L (auth: K)
Chain Length:300
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 3
Gene (Uniprot):ARPC3
Chain IDs:E, M (auth: L)
Chain Length:178
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 4
Gene (Uniprot):ARPC4
Chain IDs:F, N
Chain Length:168
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 5
Gene (Uniprot):ARPC5
Chain IDs:G, O
Chain Length:151
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:NCK-interacting protein with SH3 domain
Gene (Uniprot):NCKIPSD
Chain IDs:H (auth: M), P
Chain Length:455
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:unidentified
Chain IDs:Q
Chain Length:6
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:unidentified
Chain IDs:R
Chain Length:9
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure of the nucleation-promoting factor SPIN90 bound to the actin filament nucleator Arp2/3 complex.
EMBO J. 37 ? ? (2018)
PMID: 30322896 DOI: 10.15252/embj.2018100005

Abstact

Unlike the WASP family of Arp2/3 complex activators, WISH/DIP/SPIN90 (WDS) family proteins activate actin filament nucleation by the Arp2/3 complex without the need for a preformed actin filament. This allows WDS proteins to initiate branched actin network assembly by providing seed filaments that activate WASP-bound Arp2/3 complex. Despite their important role in actin network initiation, it is unclear how WDS proteins drive the activating steps that require both WASP and pre-existing actin filaments during WASP-mediated nucleation. Here, we show that SPIN90 folds into an armadillo repeat domain that binds a surface of Arp2/3 complex distinct from the two WASP sites, straddling a hinge point that may stimulate movement of the Arp2 subunit into the activated short-pitch conformation. SPIN90 binds a surface on Arp2/3 complex that overlaps with actin filament binding, explaining how it could stimulate the same structural rearrangements in the complex as pre-existing actin filaments. By revealing how WDS proteins activate the Arp2/3 complex, these data provide a molecular foundation to understand initiation of dendritic actin networks and regulation of Arp2/3 complex by its activators.

Legend

Protein

Chemical

Disease

Primary Citation of related structures