6DE6 image
Entry Detail
PDB ID:
6DE6
Keywords:
Title:
2.1 A resolution structure of histamine dehydrogenase from Rhizobium sp. 4-9
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-05-11
Release Date:
2019-05-15
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Histamine dehydrogenase
Chain IDs:A, B
Chain Length:696
Number of Molecules:2
Biological Source:Rhizobium sp. 4-9
Primary Citation
Structure of Rhizobium sp. 4-9 histamine dehydrogenase and analysis of the electron transfer pathway to an abiological electron acceptor.
Arch.Biochem.Biophys. ? 109612 109612 (2023)
PMID: 37146865 DOI: 10.1016/j.abb.2023.109612

Abstact

Histamine dehydrogenase from the gram-negative bacterium Rhizobium sp. 4-9 (HaDHR) is a member of a small family of dehydrogenases containing a covalently attached FMN, and the only member so far identified to date that does not exhibit substrate inhibition. In this study, we present the 2.1 Å resolution crystal structure of HaDHR. This new structure allowed for the identification of the internal electron transfer pathway to abiological ferrocene-based mediators. Alanine 437 was identified as the exit point of electrons from the Fe4S4 cluster. The enzyme was modified with a Ser436Cys mutation to facilitate covalent attachment of a ferrocene moiety. When modified with Fc-maleimide, this new construct demonstrated direct electron transfer from the enzyme to a gold electrode in a histamine concentration-dependent manner without the need for any additional electron mediators.

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