6DDU image
Deposition Date 2018-05-10
Release Date 2019-01-09
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6DDU
Keywords:
Title:
mouse beta-mannosidase bound to beta-D-mannose (MANBA)
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.67 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-mannosidase
Gene (Uniprot):Manba
Chain IDs:A
Chain Length:868
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
The structure of mammalian beta-mannosidase provides insight into beta-mannosidosis and nystagmus.
FEBS J. 286 1319 1331 (2019)
PMID: 30552791 DOI: 10.1111/febs.14731

Abstact

β-Mannosidase is a lysosomal enzyme from the glycosyl hydrolase family 2 that cleaves the single β(1-4)-linked mannose at the nonreducing end of N-glycosylated proteins, and plays an important role in the polysaccharide degradation pathway. Mutations in the MANBA gene, which encodes the β-mannosidase, can lead to the lysosomal storage disease β-mannosidosis, as well as nystagmus, an eye condition characterized by involuntary eye movements. Here, we present the first structures of a mammalian β-mannosidase in both the apo- and mannose-bound forms. The structure is similar to previously determined β-mannosidase structures with regard to domain organization and fold, however, there are important differences that underlie substrate specificity between species. Additionally, in contrast to most other ligand-bound β-mannosidases from bacterial and fungal sources where bound sugars were in a boat-like conformation, we find the mannose in the chair conformation. Evaluation of known disease mutations in the MANBA gene provides insight into their impact on disease phenotypes. Together, these results will be important for the design of therapeutics for treating diseases caused by β-mannosidase deficiency. DATABASE: Structural data are available in the Protein Data Bank under the accession numbers 6DDT and 6DDU.

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Primary Citation of related structures