6DDR image
Entry Detail
PDB ID:
6DDR
Keywords:
Title:
Crystal Structure Analysis of the Epitope of an Anti-MICA Antibody
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-05-10
Release Date:
2018-10-24
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Anti-MICA Fab fragment light chain clone 13A9
Chain IDs:A
Chain Length:214
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Anti-MICA Fab fragment heavy chain clone 13A9
Chain IDs:B
Chain Length:221
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:MHC class I polypeptide-related sequence A
Chain IDs:C
Chain Length:94
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
High-resolution glycosylation site-engineering method identifies MICA epitope critical for shedding inhibition activity of anti-MICA antibodies.
MAbs 11 75 93 (2019)
PMID: 30307368 DOI: 10.1080/19420862.2018.1532767

Abstact

As an immune evasion strategy, MICA and MICB, the major histocompatibility complex class I homologs, are proteolytically cleaved from the surface of cancer cells leading to impairment of CD8 + T cell- and natural killer cell-mediated immune responses. Antibodies that inhibit MICA/B shedding from tumors have therapeutic potential, but the optimal epitopes are unknown. Therefore, we developed a high-resolution, high-throughput glycosylation-engineered epitope mapping (GEM) method, which utilizes site-specific insertion of N-linked glycans onto the antigen surface to mask local regions. We apply GEM to the discovery of epitopes important for shedding inhibition of MICA/B and validate the epitopes at the residue level by alanine scanning and X-ray crystallography (Protein Data Bank accession numbers 6DDM (1D5 Fab-MICA*008), 6DDR (13A9 Fab-MICA*008), 6DDV (6E1 Fab-MICA*008). Furthermore, we show that potent inhibition of MICA shedding can be achieved by antibodies that bind GEM epitopes adjacent to previously reported cleavage sites, and that these anti-MICA/B antibodies can prevent tumor growth in vivo.

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