6DCH image
Deposition Date 2018-05-07
Release Date 2018-06-27
Last Version Date 2023-10-11
Entry Detail
PDB ID:
6DCH
Keywords:
Title:
Structure of isonitrile biosynthesis enzyme ScoE
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ScoE protein
Chain IDs:A
Chain Length:326
Number of Molecules:1
Biological Source:Streptomyces coeruleorubidus
Primary Citation
Isonitrile Formation by a Non-Heme Iron(II)-Dependent Oxidase/Decarboxylase.
Angew. Chem. Int. Ed. Engl. 57 9707 9710 (2018)
PMID: 29906336 DOI: 10.1002/anie.201804307

Abstact

The electron-rich isonitrile is an important functionality in bioactive natural products, but its biosynthesis has been restricted to the IsnA family of isonitrile synthases. We herein provide the first structural and biochemical evidence of an alternative mechanism for isonitrile formation. ScoE, a putative non-heme iron(II)-dependent enzyme from Streptomyces coeruleorubidus, was shown to catalyze the conversion of (R)-3-((carboxymethyl)amino)butanoic acid to (R)-3-isocyanobutanoic acid through an oxidative decarboxylation mechanism. This work further provides a revised scheme for the biosynthesis of a unique class of isonitrile lipopeptides, of which several members are critical for the virulence of pathogenic mycobacteria.

Legend

Protein

Chemical

Disease

Primary Citation of related structures