6DC2 image
Entry Detail
PDB ID:
6DC2
Keywords:
Title:
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase C301S variant
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-05-04
Release Date:
2018-10-03
Method Details:
Experimental Method:
Resolution:
1.99 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Carbon monoxide dehydrogenase
Mutations:C301S
Chain IDs:A, B, C, D
Chain Length:637
Number of Molecules:4
Biological Source:Desulfovibrio vulgaris
Primary Citation
Redox-dependent rearrangements of the NiFeS cluster of carbon monoxide dehydrogenase.
Elife 7 ? ? (2018)
PMID: 30277213 DOI: 10.7554/eLife.39451

Abstact

The C-cluster of the enzyme carbon monoxide dehydrogenase (CODH) is a structurally distinctive Ni-Fe-S cluster employed to catalyze the reduction of CO2 to CO as part of the Wood-Ljungdahl carbon fixation pathway. Using X-ray crystallography, we have observed unprecedented conformational dynamics in the C-cluster of the CODH from Desulfovibrio vulgaris, providing the first view of an oxidized state of the cluster. Combined with supporting spectroscopic data, our structures reveal that this novel, oxidized cluster arrangement plays a role in avoiding irreversible oxidative degradation at the C-cluster. Furthermore, mutagenesis of a conserved cysteine residue that binds the C-cluster in the oxidized state but not in the reduced state suggests that the oxidized conformation could be important for proper cluster assembly, in particular Ni incorporation. Together, these results lay a foundation for future investigations of C-cluster activation and assembly, and contribute to an emerging paradigm of metallocluster plasticity.

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