6DBS image
Deposition Date 2018-05-03
Release Date 2018-09-19
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6DBS
Title:
Fusion surface structure, function, and dynamics of gamete fusogen HAP2
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hapless 2
Gene (Uniprot):HAP2
Chain IDs:A, B (auth: C), C (auth: B)
Chain Length:565
Number of Molecules:3
Biological Source:Chlamydomonas reinhardtii
Ligand Molecules
Primary Citation
Fusion surface structure, function, and dynamics of gamete fusogen HAP2.
Elife 7 ? ? (2018)
PMID: 30281023 DOI: 10.7554/eLife.39772

Abstact

HAP2 is a class II gamete fusogen in many eukaryotic kingdoms. A crystal structure of Chlamydomonas HAP2 shows a trimeric fusion state. Domains D1, D2.1 and D2.2 line the 3-fold axis; D3 and a stem pack against the outer surface. Surprisingly, hydrogen-deuterium exchange shows that surfaces of D1, D2.2 and D3 closest to the 3-fold axis are more dynamic than exposed surfaces. Three fusion helices in the fusion loops of each monomer expose hydrophobic residues at the trimer apex that are splayed from the 3-fold axis, leaving a solvent-filled cavity between the fusion loops in each monomer. At the base of the two fusion loops, Arg185 docks in a carbonyl cage. Comparisons to other structures, dynamics, and the greater effect on Chlamydomonas gamete fusion of mutation of axis-proximal than axis-distal fusion helices suggest that the apical portion of each monomer could tilt toward the 3-fold axis with merger of the fusion helices into a common fusion surface.

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Primary Citation of related structures