6D9W image
Deposition Date 2018-04-30
Release Date 2019-02-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6D9W
Title:
Crystal structure of Deinococcus radiodurans MntH, an Nramp-family transition metal transporter, in the inward-open apo state
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.94 Å
R-Value Free:
0.30
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Divalent metal cation transporter MntH
Gene (Uniprot):mntH
Mutations:Q169H, K170H, E251Y, E252Y, K253Y, R398H, R399H
Chain IDs:A
Chain Length:420
Number of Molecules:1
Biological Source:Deinococcus radiodurans
Polymer Type:polypeptide(L)
Molecule:Fab Heavy Chain
Chain IDs:B (auth: H)
Chain Length:213
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fab Light Chain
Chain IDs:C (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structures in multiple conformations reveal distinct transition metal and proton pathways in an Nramp transporter.
Elife 8 ? ? (2019)
PMID: 30714568 DOI: 10.7554/eLife.41124

Abstact

Nramp family transporters-expressed in organisms from bacteria to humans-enable uptake of essential divalent transition metals via an alternating-access mechanism that also involves proton transport. We present high-resolution structures of Deinococcus radiodurans (Dra)Nramp in multiple conformations to provide a thorough description of the Nramp transport cycle by identifying the key intramolecular rearrangements and changes to the metal coordination sphere. Strikingly, while metal transport requires cycling from outward- to inward-open states, efficient proton transport still occurs in outward-locked (but not inward-locked) DraNramp. We propose a model in which metal and proton enter the transporter via the same external pathway to the binding site, but follow separate routes to the cytoplasm, which could facilitate the co-transport of two cationic species. Our results illustrate the flexibility of the LeuT fold to support a broad range of substrate transport and conformational change mechanisms.

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Primary Citation of related structures