6D4F image
Deposition Date 2018-04-18
Release Date 2018-10-17
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6D4F
Keywords:
Title:
Crystal structure of PTP epsilon D2 domain (A455N/V457Y/E597D)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.91 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Receptor-type tyrosine-protein phosphatase epsilon
Gene (Uniprot):PTPRE
Mutagens:A455N, V457Y, E597D
Chain IDs:A
Chain Length:279
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
High-resolution crystal structures of the D1 and D2 domains of protein tyrosine phosphatase epsilon for structure-based drug design.
Acta Crystallogr D Struct Biol 74 1015 1026 (2018)
PMID: 30289412 DOI: 10.1107/S2059798318011919

Abstact

Here, new crystal structures are presented of the isolated membrane-proximal D1 and distal D2 domains of protein tyrosine phosphatase epsilon (PTPℇ), a protein tyrosine phosphatase that has been shown to play a positive role in the survival of human breast cancer cells. A triple mutant of the PTPℇ D2 domain (A455N/V457Y/E597D) was also constructed to reconstitute the residues of the PTPℇ D1 catalytic domain that are important for phosphatase activity, resulting in only a slight increase in the phosphatase activity compared with the native D2 protein. The structures reported here are of sufficient resolution for structure-based drug design, and a microarray-based assay for high-throughput screening to identify small-molecule inhibitors of the PTPℇ D1 domain is also described.

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Primary Citation of related structures