6D40 image
Deposition Date 2018-04-17
Release Date 2019-01-23
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6D40
Keywords:
Title:
Highly Potent and Selective Plasmin Inhibitors Based on the Sunflower Trypsin Inhibitor-1 Scaffold Attenuate Fibrinolysis in Plasma
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Helianthus annuus (Taxon ID: 4232)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.43 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Plasminogen
Gene (Uniprot):PLG
Chain IDs:A
Chain Length:248
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Trypsin inhibitor 1
Gene (Uniprot):sfti1
Mutations:T4Y
Chain IDs:B (auth: C)
Chain Length:14
Number of Molecules:1
Biological Source:Helianthus annuus
Ligand Molecules
Primary Citation
Highly Potent and Selective Plasmin Inhibitors Based on the Sunflower Trypsin Inhibitor-1 Scaffold Attenuate Fibrinolysis in Plasma.
J. Med. Chem. 62 552 560 (2019)
PMID: 30520638 DOI: 10.1021/acs.jmedchem.8b01139

Abstact

Antifibrinolytic drugs provide important pharmacological interventions to reduce morbidity and mortality from excessive bleeding during surgery and after trauma. Current drugs used for inhibiting the dissolution of fibrin, the main structural component of blood clots, are associated with adverse events due to lack of potency, high doses, and nonselective inhibition mechanisms. These drawbacks warrant the development of a new generation of highly potent and selective fibrinolysis inhibitors. Here, we use the 14-amino acid backbone-cyclic sunflower trypsin inhibitor-1 scaffold to design a highly potent (Ki = 0.05 nM) inhibitor of the primary serine protease in fibrinolysis, plasmin. This compound displays a million-fold selectivity over other serine proteases in blood, inhibits fibrinolysis in plasma more effectively than the gold-standard therapeutic inhibitor aprotinin, and is a promising candidate for development of highly specific fibrinolysis inhibitors with reduced side effects.

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