6D39 image
Deposition Date 2018-04-15
Release Date 2018-05-23
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6D39
Title:
Photodissociable dimeric Dronpa green fluorescent protein variant V (pdDronpaV)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.83 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fluorescent protein Dronpa
Gene (Uniprot):Dronpa
Chain IDs:A
Chain Length:261
Number of Molecules:1
Biological Source:Echinophyllia sp. SC22
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
GYC A CYS chromophore
Ligand Molecules
Primary Citation
Optical control of cell signaling by single-chain photoswitchable kinases.
Science 355 836 842 (2017)
PMID: 28232577 DOI: 10.1126/science.aah3605

Abstact

Protein kinases transduce signals to regulate a wide array of cellular functions in eukaryotes. A generalizable method for optical control of kinases would enable fine spatiotemporal interrogation or manipulation of these various functions. We report the design and application of single-chain cofactor-free kinases with photoswitchable activity. We engineered a dimeric protein, pdDronpa, that dissociates in cyan light and reassociates in violet light. Attaching two pdDronpa domains at rationally selected locations in the kinase domain, we created the photoswitchable kinases psRaf1, psMEK1, psMEK2, and psCDK5. Using these photoswitchable kinases, we established an all-optical cell-based assay for screening inhibitors, uncovered a direct and rapid inhibitory feedback loop from ERK to MEK1, and mediated developmental changes and synaptic vesicle transport in vivo using light.

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Primary Citation of related structures