6CYD image
Deposition Date 2018-04-05
Release Date 2018-09-19
Last Version Date 2024-03-06
Entry Detail
PDB ID:
6CYD
Title:
PDE2 in complex with compound 7
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.69 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:cGMP-dependent 3',5'-cyclic phosphodiesterase
Gene (Uniprot):PDE2A
Chain IDs:A, B
Chain Length:373
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure-Guided Design and Procognitive Assessment of a Potent and Selective Phosphodiesterase 2A Inhibitor.
ACS Med Chem Lett 9 815 820 (2018)
PMID: 30128073 DOI: 10.1021/acsmedchemlett.8b00214

Abstact

Herein we describe the development of a series of pyrazolopyrimidinone phosphodiesterase 2A (PDE2) inhibitors using structure-guided lead identification and design. The series was derived from informed chemotype replacement based on previously identified internal leads. The initially designed compound 3, while potent on PDE2, displayed unsatisfactory selectivity against the other PDE2 isoforms. Compound 3 was subsequently optimized for improved PDE2 activity and isoform selectivity. Insights into the origins of PDE2 selectivity are described and verified using cocrystallography. An optimized lead, 4, demonstrated improved performance in both a rodent and a nonhuman primate cognition model.

Legend

Protein

Chemical

Disease

Primary Citation of related structures