6CXL image
Entry Detail
PDB ID:
6CXL
Keywords:
Title:
anti-HIV-1 Fab 2G12 in complex with glycopeptide 10F5
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-04-03
Release Date:
2019-02-20
Method Details:
Experimental Method:
Resolution:
3.59 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:anti-HIV-1 Fab 2G12 heavy chain
Chain IDs:B (auth: H), D (auth: M)
Chain Length:224
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:anti-HIV-1 Fab 2G12 light chain
Chain IDs:A (auth: L), C (auth: K)
Chain Length:213
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Oligomannose Glycopeptide Conjugates Elicit Antibodies Targeting the Glycan Core Rather than Its Extremities.
ACS Cent Sci 5 237 249 (2019)
PMID: 30834312 DOI: 10.1021/acscentsci.8b00588

Abstact

Up to ∼20% of HIV-infected individuals eventually develop broadly neutralizing antibodies (bnAbs), and many of these antibodies (∼40%) target a region of dense high-mannose glycosylation on gp120 of the HIV envelope protein, known as the "high-mannose patch" (HMP). Thus, there have been numerous attempts to develop glycoconjugate vaccine immunogens that structurally mimic the HMP and might elicit bnAbs targeting this conserved neutralization epitope. Herein, we report on the immunogenicity of glycopeptides, designed by in vitro selection, that bind tightly to anti-HMP antibody 2G12. By analyzing the fine carbohydrate specificity of rabbit antibodies elicited by these immunogens, we found that they differ from some natural human bnAbs, such as 2G12 and PGT128, in that they bind primarily to the core structures within the glycan, rather than to the Manα1 → 2Man termini (2G12) or to the whole glycan (PGT128). Antibody specificity for the glycan core may result from extensive serum mannosidase trimming of the immunogen in the vaccinated animals. This finding has broad implications for vaccine design aiming to target glycan-dependent HIV neutralizing antibodies.

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Primary Citation of related structures