6CXC image
Deposition Date 2018-04-02
Release Date 2019-07-31
Last Version Date 2025-06-04
Entry Detail
PDB ID:
6CXC
Title:
3.9A Cryo-EM structure of murine antibody bound at a novel epitope of respiratory syncytial virus fusion protein
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fusion glycoprotein F0, Envelope glycoprotein chimera
Gene (Uniprot):F
Chain IDs:G (auth: A), H (auth: B), I (auth: C), J (auth: D), K (auth: E), L (auth: F)
Chain Length:548
Number of Molecules:6
Biological Source:Human respiratory syncytial virus A (strain A2), Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:R4.C6 Fab Heavy Chain
Chain IDs:A (auth: X), C (auth: G), E (auth: I)
Chain Length:118
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:R4.C6 Fab Light Chain
Chain IDs:B (auth: Y), D (auth: J), F (auth: K)
Chain Length:122
Number of Molecules:3
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structure basis of neutralization by a novel site II/IV antibody against respiratory syncytial virus fusion protein.
Plos One 14 e0210749 e0210749 (2019)
PMID: 30730999 DOI: 10.1371/journal.pone.0210749

Abstact

Globally, human respiratory syncytial virus (RSV) is a leading cause of lower respiratory tract infections in newborns, young children, and the elderly for which there is no vaccine. The RSV fusion (F) glycoprotein is a major target for vaccine development. Here, we describe a novel monoclonal antibody (designated as R4.C6) that recognizes both pre-fusion and post-fusion RSV F, and binds with nanomole affinity to a unique neutralizing site comprised of antigenic sites II and IV on the globular head. A 3.9 Å-resolution structure of RSV F-R4.C6 Fab complex was obtained by single particle cryo-electron microscopy and 3D reconstruction. The structure unraveled detailed interactions of R4.C6 with antigenic site II on one protomer and site IV on a neighboring protomer of post-fusion RSV F protein. These findings significantly further our understanding of the antigenic complexity of the F protein and provide new insights into RSV vaccine design.

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Protein

Chemical

Disease

Primary Citation of related structures
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