6CX1 image
Deposition Date 2018-04-02
Release Date 2018-10-31
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6CX1
Keywords:
Title:
Cryo-EM structure of Seneca Valley Virus-Anthrax Toxin Receptor 1 complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Senecavirus A (Taxon ID: 390157)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP1
Chain IDs:B (auth: A)
Chain Length:258
Number of Molecules:1
Biological Source:Senecavirus A
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP3
Chain IDs:D (auth: B)
Chain Length:238
Number of Molecules:1
Biological Source:Senecavirus A
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP2
Chain IDs:C
Chain Length:268
Number of Molecules:1
Biological Source:Senecavirus A
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein VP4
Chain IDs:E (auth: D)
Chain Length:58
Number of Molecules:1
Biological Source:Senecavirus A
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Anthrax toxin receptor 1
Gene (Uniprot):ANTXR1
Chain IDs:A (auth: E)
Chain Length:182
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for anthrax toxin receptor 1 recognition by Seneca Valley Virus.
Proc. Natl. Acad. Sci. U.S.A. 115 E10934 E10940 (2018)
PMID: 30381454 DOI: 10.1073/pnas.1810664115

Abstact

Recently, the use of oncolytic viruses in cancer therapy has become a realistic therapeutic option. Seneca Valley Virus (SVV) is a newly discovered picornavirus, which has earned a significant reputation as a potent oncolytic agent. Anthrax toxin receptor 1 (ANTXR1), one of the cellular receptors for the protective antigen secreted by Bacillus anthracis, has been identified as the high-affinity cellular receptor for SVV. Here, we report the structure of the SVV-ANTXR1 complex determined by single-particle cryo-electron microscopy analysis at near-atomic resolution. This is an example of a shared receptor structure between a mammalian virus and a bacterial toxin. Our structure shows that ANTXR1 decorates the outer surface of the SVV capsid and interacts with the surface-exposed BC loop and loop II of VP1, "the puff" of VP2 and "the knob" of VP3. Comparison of the receptor-bound capsid structure with the native capsid structure reveals that receptor binding induces minor conformational changes in SVV capsid structure, suggesting the role of ANTXR1 as an attachment receptor. Furthermore, our results demonstrate that the capsid footprint on the receptor is not conserved in anthrax toxin receptor 2 (ANTXR2), thereby providing a molecular mechanism for explaining the exquisite selectivity of SVV for ANTXR1.

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