6CVB image
Entry Detail
PDB ID:
6CVB
EMDB ID:
Keywords:
Title:
CryoEM structure of human enterovirus D68 in complex with 6'-sialyl-N-acetyllactosamine
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-03-27
Release Date:
2019-07-24
Method Details:
Experimental Method:
Resolution:
2.43 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:viral protein 1
Chain IDs:A
Chain Length:297
Number of Molecules:1
Biological Source:Enterovirus D68
Polymer Type:polypeptide(L)
Description:viral protein 3
Chain IDs:B
Chain Length:247
Number of Molecules:1
Biological Source:Enterovirus D68
Polymer Type:polypeptide(L)
Description:viral protein 2
Chain IDs:C
Chain Length:248
Number of Molecules:1
Biological Source:Enterovirus D68
Polymer Type:polypeptide(L)
Description:viral protein 4
Chain IDs:D
Chain Length:68
Number of Molecules:1
Biological Source:Enterovirus D68
Peptide-like Molecules
PRD_900046
Primary Citation
Bypassing pan-enterovirus host factor PLA2G16.
Nat Commun 10 3171 3171 (2019)
PMID: 31320648 DOI: 10.1038/s41467-019-11256-z

Abstact

Enteroviruses are a major cause of human disease. Adipose-specific phospholipase A2 (PLA2G16) was recently identified as a pan-enterovirus host factor and potential drug target. In this study, we identify a possible mechanism of PLA2G16 evasion by employing a dual glycan receptor-binding enterovirus D68 (EV-D68) strain. We previously showed that this strain does not strictly require the canonical EV-D68 receptor sialic acid. Here, we employ a haploid screen to identify sulfated glycosaminoglycans (sGAGs) as its second glycan receptor. Remarkably, engagement of sGAGs enables this virus to bypass PLA2G16. Using cryo-EM analysis, we reveal that, in contrast to sialic acid, sGAGs stimulate genome release from virions via structural changes that enlarge the putative openings for genome egress. Together, we describe an enterovirus that can bypass PLA2G16 and identify additional virion destabilization as a potential mechanism to circumvent PLA2G16.

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Primary Citation of related structures