ISDA

Deposition Date 2018-03-14

Release Date 2018-05-23

Last Version Date 2023-10-04

Entry Detail

PDB ID:

6CPW

Keywords:

TRANSFERASE/TRANSFERASE inhibitor

Title:

Discovery of 3(S)-thiomethyl pyrrolidine ERK inhibitors for oncology

Biological Source:

Source Organism:

Rattus norvegicus (Taxon ID: 10116)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.85 Å

R-Value Free:

0.22

R-Value Work:

0.18

R-Value Observed:

0.19

Space Group:

P 21 21 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Mitogen-activated protein kinase 1
Gene (Uniprot):Mapk1
Chain IDs:A
Chain Length:366
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P63086 Pfam ID:PF00069 EC:2.7.11.24

Ligand Molecules

F8V

SO4

Primary Citation

Discovery of 3(S)-thiomethyl pyrrolidine ERK inhibitors for oncology.

Boga, S.B, Alhassan, A.B, Cooper, A.B, Doll, R, Shih, N.Y, Shipps, G, Deng, Y, Zhu, H, Nan, Y, Sun, R, Zhu, L, Desai, J, Patel, M, Muppalla, K, Gao, X, Wang, J, Yao, X, Kelly, J, Gudipati, S, Paliwal, S, Tsui, H.C, Wang, T, Sherborne, B, Xiao, L, Hruza, A, Buevich, A, Zhang, L.K, Hesk, D, Samatar, A.A, Carr, D, Long, B, Black, S, Dayananth, P, Windsor, W, Kirschmeier, P, Bishop, R.Show

Bioorg. Med. Chem. Lett. 28 2029 2034 (2018)

PMID: 29748051 DOI: 10.1016/j.bmcl.2018.04.063

Abstact

Compound 5 (SCH772984) was identified as a potent inhibitor of ERK1/2 with excellent selectivity against a panel of kinases (0/231 kinases tested @ 100 nM) and good cell proliferation activity, but suffered from poor PK (rat AUC PK @10 mpk = 0 μM h; F% = 0) which precluded further development. In an effort to identify novel ERK inhibitors with improved PK properties with respect to 5, a systematic exploration of sterics and composition at the 3-position of the pyrrolidine led to the discovery of a novel 3(S)-thiomethyl pyrrolidine analog 28 with vastly improved PK (rat AUC PK @10 mpk = 26 μM h; F% = 70).

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Primary Citation of related structures