6CP3 image
Entry Detail
PDB ID:
6CP3
EMDB ID:
Title:
Monomer yeast ATP synthase (F1Fo) reconstituted in nanodisc with inhibitor of oligomycin bound.
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-03-13
Release Date:
2018-04-11
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ATP synthase subunit H, mitochondrial
Chain IDs:W (auth: 6)
Chain Length:92
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit d, mitochondrial
Chain IDs:V (auth: 7)
Chain Length:173
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase protein 8
Chain IDs:Y (auth: 8)
Chain Length:48
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit alpha, mitochondrial
Chain IDs:L (auth: A), M (auth: B), N (auth: C)
Chain Length:510
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit beta, mitochondrial
Chain IDs:O (auth: D), P (auth: E), Q (auth: F)
Chain Length:478
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit gamma, mitochondrial
Chain IDs:R (auth: G)
Chain Length:278
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit delta, mitochondrial
Chain IDs:S (auth: H)
Chain Length:138
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit epsilon, mitochondrial
Chain IDs:T (auth: I)
Chain Length:61
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit J, mitochondrial
Chain IDs:AA (auth: J)
Chain Length:37
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit 9, mitochondrial
Chain IDs:A (auth: K), B (auth: L), C (auth: M), D (auth: N), E (auth: O), F (auth: P), G (auth: Q), H (auth: R), I (auth: S), J (auth: T)
Chain Length:76
Number of Molecules:10
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:ATP synthase subunit f, mitochondrial
Chain IDs:X (auth: U)
Chain Length:95
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit a
Chain IDs:Z (auth: X)
Chain Length:249
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit 5, mitochondrial
Chain IDs:K (auth: Y)
Chain Length:195
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Description:ATP synthase subunit 4, mitochondrial
Chain IDs:U (auth: Z)
Chain Length:209
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME A MET modified residue
Primary Citation
High-resolution cryo-EM analysis of the yeast ATP synthase in a lipid membrane.
Science 360 ? ? (2018)
PMID: 29650704 DOI: 10.1126/science.aas9699

Abstact

Mitochondrial adenosine triphosphate (ATP) synthase comprises a membrane embedded Fo motor that rotates to drive ATP synthesis in the F1 subunit. We used single-particle cryo-electron microscopy (cryo-EM) to obtain structures of the full complex in a lipid bilayer in the absence or presence of the inhibitor oligomycin at 3.6- and 3.8-angstrom resolution, respectively. To limit conformational heterogeneity, we locked the rotor in a single conformation by fusing the F6 subunit of the stator with the δ subunit of the rotor. Assembly of the enzyme with the F6-δ fusion caused a twisting of the rotor and a 9° rotation of the Fo c10-ring in the direction of ATP synthesis, relative to the structure of isolated Fo Our cryo-EM structures show how F1 and Fo are coupled, give insight into the proton translocation pathway, and show how oligomycin blocks ATP synthesis.

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Primary Citation of related structures