6CP2 image
Deposition Date 2018-03-13
Release Date 2018-08-01
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6CP2
Keywords:
Title:
SidC in complex with UbcH7~Ub
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SidC
Gene (Uniprot):sidC
Mutations:C46A
Chain IDs:A
Chain Length:542
Number of Molecules:1
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 L3
Gene (Uniprot):UBE2L3
Mutations:C86K
Chain IDs:B
Chain Length:154
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Polyubiquitin-B
Gene (Uniprot):UBB
Chain IDs:C
Chain Length:78
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Insights into the ubiquitin transfer cascade catalyzed by theLegionellaeffector SidC.
Elife 7 ? ? (2018)
PMID: 30015617 DOI: 10.7554/eLife.36154

Abstact

The causative agent of Legionnaires' disease, Legionella pneumophila, delivers more than 330 virulent effectors to its host to establish an intracellular membrane-bound organelle called the Legionella containing vacuole. Among the army of Legionella effectors, SidC and its paralog SdcA have been identified as novel bacterial ubiquitin (Ub) E3 ligases. To gain insight into the molecular mechanism of SidC/SdcA as Ub ligases, we determined the crystal structures of a binary complex of the N-terminal catalytic SNL domain of SdcA with its cognate E2 UbcH5C and a ternary complex consisting of the SNL domain of SidC with the Ub-linked E2 UbcH7. These two structures reveal the molecular determinants governing the Ub transfer cascade catalyzed by SidC. Together, our data support a common mechanism in the Ub transfer cascade in which the donor Ub is immobilized with its C-terminal tail locked in an extended conformation, priming the donor Ub for catalysis.

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Primary Citation of related structures