6CP0 image
Deposition Date 2018-03-13
Release Date 2018-08-01
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6CP0
Keywords:
Title:
SdcA in complex with the E2, UbcH5C
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.01 Å
R-Value Free:
0.26
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SdcA
Gene (Uniprot):sdcA
Mutations:C45A
Chain IDs:A
Chain Length:538
Number of Molecules:1
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 D3
Gene (Uniprot):UBE2D3
Mutations:C85S
Chain IDs:B
Chain Length:149
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Insights into the ubiquitin transfer cascade catalyzed by theLegionellaeffector SidC.
Elife 7 ? ? (2018)
PMID: 30015617 DOI: 10.7554/eLife.36154

Abstact

The causative agent of Legionnaires' disease, Legionella pneumophila, delivers more than 330 virulent effectors to its host to establish an intracellular membrane-bound organelle called the Legionella containing vacuole. Among the army of Legionella effectors, SidC and its paralog SdcA have been identified as novel bacterial ubiquitin (Ub) E3 ligases. To gain insight into the molecular mechanism of SidC/SdcA as Ub ligases, we determined the crystal structures of a binary complex of the N-terminal catalytic SNL domain of SdcA with its cognate E2 UbcH5C and a ternary complex consisting of the SNL domain of SidC with the Ub-linked E2 UbcH7. These two structures reveal the molecular determinants governing the Ub transfer cascade catalyzed by SidC. Together, our data support a common mechanism in the Ub transfer cascade in which the donor Ub is immobilized with its C-terminal tail locked in an extended conformation, priming the donor Ub for catalysis.

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Primary Citation of related structures