6COA image
Deposition Date 2018-03-12
Release Date 2018-03-28
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6COA
Keywords:
Title:
1.2 A Structure of Thaumatin Crystallized in Gel
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.20 Å
R-Value Free:
0.11
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thaumatin-1
Chain IDs:A
Chain Length:207
Number of Molecules:1
Biological Source:Thaumatococcus daniellii
Ligand Molecules
Primary Citation
Towards atomic resolution with crystals grown in gel: the case of thaumatin seen at room temperature.
Proteins 48 146 150 (2002)
PMID: 12112683 DOI: 10.1002/prot.10125

Abstact

One reason for introducing a gel in the crystallization medium of proteins is its ability to reduce convection in solution. This can lead to better nucleation and growth conditions, and to crystals having enhanced diffraction properties. We report here the X-ray characterization at room temperature of high-quality crystals of the intensely sweet thaumatin prepared in a sodium tartrate solution gelified with 0.15% (m/v) agarose. Using a synchrotron radiation, these crystals diffracted to a previously unachieved resolution. A diffraction dataset was collected from four crystals at a resolution of 1.2 A with a R(sym) of 3.6% and a completeness of 99%. Refinement was carried out to a final crystallographic R-factor of 12.0%. The quality of the electron density map allowed for the observation of fine structural details in the protein and its solvation shell. Crystallization in gel might be used more generally to improve the quality of macromolecular crystals. Advantages provided by the gelified medium in the frame of structural studies are emphasized.

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Primary Citation of related structures