6CNY image
Entry Detail
PDB ID:
6CNY
Title:
2.3 Angstrom Structure of Phosphodiesterase treated Vivid (complex with FMN)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-03-09
Release Date:
2018-03-21
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Vivid PAS protein VVD
Chain IDs:A, B, C, D
Chain Length:151
Number of Molecules:4
Biological Source:Neurospora crassa
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSX A CYS modified residue
Ligand Molecules
Primary Citation
Conformational switching in the fungal light sensor Vivid.
Science 316 1054 1057 (2007)
PMID: 17510367 DOI: 10.1126/science.1137128

Abstact

The Neurospora crassa photoreceptor Vivid tunes blue-light responses and modulates gating of the circadian clock. Crystal structures of dark-state and light-state Vivid reveal a light, oxygen, or voltage Per-Arnt-Sim domain with an unusual N-terminal cap region and a loop insertion that accommodates the flavin cofactor. Photoinduced formation of a cystein-flavin adduct drives flavin protonation to induce an N-terminal conformational change. A cysteine-to-serine substitution remote from the flavin adenine dinucleotide binding site decouples conformational switching from the flavin photocycle and prevents Vivid from sending signals in Neurospora. Key elements of this activation mechanism are conserved by other photosensors such as White Collar-1, ZEITLUPE, ENVOY, and flavin-binding, kelch repeat, F-BOX 1 (FKF1).

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Primary Citation of related structures