6CNI image
Entry Detail
PDB ID:
6CNI
Title:
Crystal structure of H105A PGAM5 dimer
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-03-08
Release Date:
2019-02-13
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Serine/threonine-protein phosphatase PGAM5, mitochondrial
Mutations:H105A
Chain IDs:A, B
Chain Length:223
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Functional role of PGAM5 multimeric assemblies and their polymerization into filaments.
Nat Commun 10 531 531 (2019)
PMID: 30705304 DOI: 10.1038/s41467-019-08393-w

Abstact

PGAM5 is a mitochondrial protein phosphatase whose genetic ablation in mice results in mitochondria-related disorders, including neurodegeneration. Functions of PGAM5 include regulation of mitophagy, cell death, metabolism and aging. However, mechanisms regulating PGAM5 activation and signaling are poorly understood. Using electron cryo-microscopy, we show that PGAM5 forms dodecamers in solution. We also present a crystal structure of PGAM5 that reveals the determinants of dodecamer formation. Furthermore, we observe PGAM5 dodecamer assembly into filaments both in vitro and in cells. We find that PGAM5 oligomerization into a dodecamer is not only essential for catalytic activation, but this form also plays a structural role on mitochondrial membranes, which is independent of phosphatase activity. Together, these findings suggest that modulation of the oligomerization of PGAM5 may be a regulatory switch of potential therapeutic interest.

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Primary Citation of related structures