6CM2 image
Deposition Date 2018-03-02
Release Date 2019-06-19
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6CM2
Keywords:
Title:
SAMHD1 HD domain bound to decitabine triphosphate
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.14 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
Gene (Uniprot):SAMHD1
Mutations:H94R, D95N
Chain IDs:A (auth: D), B (auth: C), C (auth: B), D (auth: A)
Chain Length:514
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Selective inactivation of hypomethylating agents by SAMHD1 provides a rationale for therapeutic stratification in AML.
Nat Commun 10 3475 3475 (2019)
PMID: 31375673 DOI: 10.1038/s41467-019-11413-4

Abstact

Hypomethylating agents decitabine and azacytidine are regarded as interchangeable in the treatment of acute myeloid leukemia (AML). However, their mechanisms of action remain incompletely understood, and predictive biomarkers for HMA efficacy are lacking. Here, we show that the bioactive metabolite decitabine triphosphate, but not azacytidine triphosphate, functions as activator and substrate of the triphosphohydrolase SAMHD1 and is subject to SAMHD1-mediated inactivation. Retrospective immunohistochemical analysis of bone marrow specimens from AML patients at diagnosis revealed that SAMHD1 expression in leukemic cells inversely correlates with clinical response to decitabine, but not to azacytidine. SAMHD1 ablation increases the antileukemic activity of decitabine in AML cell lines, primary leukemic blasts, and xenograft models. AML cells acquire resistance to decitabine partly by SAMHD1 up-regulation. Together, our data suggest that SAMHD1 is a biomarker for the stratified use of hypomethylating agents in AML patients and a potential target for the treatment of decitabine-resistant leukemia.

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Primary Citation of related structures