6CK9 image
Entry Detail
PDB ID:
6CK9
Keywords:
Title:
Crystal Structure of HIV-1 ConC_Base0 Prefusion Env Trimer in Complex with Human Antibody Fragment 3H109L and 35O22 variants at 3.5 Angstrom
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2018-02-27
Release Date:
2018-04-25
Method Details:
Experimental Method:
Resolution:
2.71 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:gp41 ectodomain of Envelope glycoprotein gp160
Chain IDs:A (auth: B)
Chain Length:153
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:35O22 scFv heavy chain portion
Chain IDs:B (auth: D)
Chain Length:134
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:35O22 scFv light chain portion
Chain IDs:C (auth: E)
Chain Length:114
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:gp120 of Envelope glycoprotein gp160
Chain IDs:D (auth: G)
Chain Length:463
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:3H109L Fab heavy chain
Chain IDs:E (auth: H)
Chain Length:244
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:3H109L Fab light chain
Chain IDs:F (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A Universal Approach to Optimize the Folding and Stability of Prefusion-Closed HIV-1 Envelope Trimers.
Cell Rep 23 584 595 (2018)
PMID: 29642014 DOI: 10.1016/j.celrep.2018.03.061

Abstact

The heavily glycosylated native-like envelope (Env) trimer of HIV-1 is expected to have low immunogenicity, whereas misfolded forms are often highly immunogenic. High-quality correctly folded Envs may therefore be critical for developing a vaccine that induces broadly neutralizing antibodies. Moreover, the high variability of Env may require immunizations with multiple Envs. Here, we report a universal strategy that provides for correctly folded Env trimers of high quality and yield through a repair-and-stabilize approach. In the repair stage, we utilized a consensus strategy that substituted rare strain-specific residues with more prevalent ones. The stabilization stage involved structure-based design and experimental assessment confirmed by crystallographic feedback. Regions important for the refolding of Env were targeted for stabilization. Notably, the α9-helix and an intersubunit β sheet proved to be critical for trimer stability. Our approach provides a means to produce prefusion-closed Env trimers from diverse HIV-1 strains, a substantial advance for vaccine development.

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