6CHB image
Deposition Date 2018-02-22
Release Date 2018-05-02
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6CHB
Keywords:
Title:
Crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV-1 Envelope Trimer in complex with the broadly-neutralizing antibodies BG18 and IOMA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.80 Å
R-Value Free:
0.41
R-Value Work:
0.31
R-Value Observed:
0.32
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41
Chain IDs:A (auth: B), G (auth: A), M (auth: C)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:IOMA Heavy Chain
Chain IDs:E (auth: D), I (auth: M), O
Chain Length:232
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:IOMA Light Chain
Chain IDs:F (auth: E), J (auth: N), P
Chain Length:214
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Gene (Uniprot):env
Chain IDs:B (auth: G), H (auth: F), N (auth: H)
Chain Length:479
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:BG18 Heavy Chain
Chain IDs:C (auth: J), K (auth: I), Q
Chain Length:241
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:BG18 Light Chain
Chain IDs:D (auth: K), L, R
Chain Length:215
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural characterization of a highly-potent V3-glycan broadly neutralizing antibody bound to natively-glycosylated HIV-1 envelope.
Nat Commun 9 1251 1251 (2018)
PMID: 29593217 DOI: 10.1038/s41467-018-03632-y

Abstact

Broadly neutralizing antibodies (bNAbs) isolated from HIV-1-infected individuals inform HIV-1 vaccine design efforts. Developing bNAbs with increased efficacy requires understanding how antibodies interact with the native oligomannose and complex-type N-glycan shield that hides most protein epitopes on HIV-1 envelope (Env). Here we present crystal structures, including a 3.8-Å X-ray free electron laser dataset, of natively glycosylated Env trimers complexed with BG18, the most potent V3/N332gp120 glycan-targeting bNAb reported to date. Our structures show conserved contacts mediated by common D gene-encoded residues with the N332gp120 glycan and the gp120 GDIR peptide motif, but a distinct Env-binding orientation relative to PGT121/10-1074 bNAbs. BG18's binding orientation provides additional contacts with N392gp120 and N386gp120 glycans near the V3-loop base and engages protein components of the V1-loop. The BG18-natively-glycosylated Env structures facilitate understanding of bNAb-glycan interactions critical for using V3/N332gp120 bNAbs therapeutically and targeting their epitope for immunogen design.

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Primary Citation of related structures