6CH7 image
Entry Detail
PDB ID:
6CH7
Keywords:
Title:
XFEL crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV-1 Envelope Trimer in complex with the broadly-neutralizing antibodies BG18 and 35O22
Biological Source:
PDB Version:
Deposition Date:
2018-02-22
Release Date:
2018-05-02
Method Details:
Experimental Method:
Resolution:
3.80 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp41
Chain IDs:A (auth: B)
Chain Length:153
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:35O22 Heavy Chain
Chain IDs:B (auth: D)
Chain Length:243
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:35O22 Light Chain
Chain IDs:C (auth: E)
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp120
Chain IDs:D (auth: G)
Chain Length:479
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:BG18 Heavy Chain
Chain IDs:E (auth: Q)
Chain Length:241
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:BG18 Light Chain
Chain IDs:F (auth: R)
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural characterization of a highly-potent V3-glycan broadly neutralizing antibody bound to natively-glycosylated HIV-1 envelope.
Nat Commun 9 1251 1251 (2018)
PMID: 29593217 DOI: 10.1038/s41467-018-03632-y

Abstact

Broadly neutralizing antibodies (bNAbs) isolated from HIV-1-infected individuals inform HIV-1 vaccine design efforts. Developing bNAbs with increased efficacy requires understanding how antibodies interact with the native oligomannose and complex-type N-glycan shield that hides most protein epitopes on HIV-1 envelope (Env). Here we present crystal structures, including a 3.8-Å X-ray free electron laser dataset, of natively glycosylated Env trimers complexed with BG18, the most potent V3/N332gp120 glycan-targeting bNAb reported to date. Our structures show conserved contacts mediated by common D gene-encoded residues with the N332gp120 glycan and the gp120 GDIR peptide motif, but a distinct Env-binding orientation relative to PGT121/10-1074 bNAbs. BG18's binding orientation provides additional contacts with N392gp120 and N386gp120 glycans near the V3-loop base and engages protein components of the V1-loop. The BG18-natively-glycosylated Env structures facilitate understanding of bNAb-glycan interactions critical for using V3/N332gp120 bNAbs therapeutically and targeting their epitope for immunogen design.

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Primary Citation of related structures