6CGR image
Deposition Date 2018-02-20
Release Date 2018-03-14
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6CGR
Keywords:
Title:
CryoEM structure of herpes simplex virus 1 capsid with associated tegument protein complexes.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 1
Gene (Uniprot):UL38
Chain IDs:FA (auth: 5), IA (auth: 8), LA (auth: b), OA (auth: e), RA (auth: h)
Chain Length:465
Number of Molecules:5
Biological Source:Human herpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Triplex capsid protein 2
Gene (Uniprot):UL18
Chain IDs:GA (auth: 6), HA (auth: 7), JA (auth: 9), KA (auth: a), MA (auth: c), NA (auth: d), PA (auth: f), QA (auth: g), SA (auth: i), TA (auth: j)
Chain Length:318
Number of Molecules:10
Biological Source:Human herpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):UL19
Chain IDs:A, B, C, D, E, F, M, N, O, S, T, U, V, W, X, EA (auth: 4)
Chain Length:1374
Number of Molecules:16
Biological Source:Human herpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Small capsomere-interacting protein
Gene (Uniprot):UL35
Chain IDs:G, H, I, J, K, L, P, Q, R, Y, Z, AA (auth: 0), BA (auth: 1), CA (auth: 2), DA (auth: 3)
Chain Length:112
Number of Molecules:15
Biological Source:Human herpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Capsid vertex component 1
Gene (Uniprot):UL17
Chain IDs:UA (auth: k)
Chain Length:703
Number of Molecules:1
Biological Source:Human herpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Capsid vertex component 2
Gene (Uniprot):UL25
Chain IDs:VA (auth: l), WA (auth: m)
Chain Length:580
Number of Molecules:2
Biological Source:Human herpesvirus 1
Polymer Type:polypeptide(L)
Molecule:Large tegument protein deneddylase
Gene (Uniprot):UL36
Chain IDs:XA (auth: n), YA (auth: o)
Chain Length:3139
Number of Molecules:2
Biological Source:Human herpesvirus 1
Ligand Molecules
Primary Citation
Structure of the herpes simplex virus 1 capsid with associated tegument protein complexes.
Science 360 ? ? (2018)
PMID: 29622628 DOI: 10.1126/science.aao7298

Abstact

Herpes simplex viruses (HSVs) rely on capsid-associated tegument complex (CATC) for long-range axonal transport of their genome-containing capsids between sites of infection and neuronal cell bodies. Here we report cryo-electron microscopy structures of the HSV-1 capsid with CATC up to 3.5-angstrom resolution and atomic models of multiple conformers of capsid proteins VP5, VP19c, VP23, and VP26 and tegument proteins pUL17, pUL25, and pUL36. Crowning every capsid vertex are five copies of heteropentameric CATC, each containing a pUL17 monomer supporting the coiled-coil helix bundle of a pUL25 dimer and a pUL36 dimer, thus positioning their flexible domains for potential involvement in nuclear capsid egress and axonal capsid transport. Notwithstanding newly discovered fold conservation between triplex proteins and bacteriophage λ protein gpD and the previously recognized bacteriophage HK97 gp5-like fold in VP5, HSV-1 capsid proteins exhibit extraordinary diversity in forms of domain insertion and conformational polymorphism, not only for interactions with tegument proteins but also for encapsulation of large genomes.

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Primary Citation of related structures