6CGI image
Deposition Date 2018-02-20
Release Date 2018-02-28
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6CGI
Title:
Structure of Salmonella Effector SseK3
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Type III secretion system effector protein
Gene (Uniprot):G1W50_07705, G1W53_11560, G1W54_11945, G1W56_12450, G1W63_12255, G1W64_12270, G1W86_10855, G1W87_22055, G1W89_11745, G1X03_12135, G1X09_12595, G1X10_12510, G1X13_12590, G1X15_07355, G1X17_12600, G1X23_12495, G1X32_11650, G1X38_11955, G1X47_10960, G1X49_12150, G1X51_12595, G1X66_11955, G1X68_11040, G1X69_12865, G1X71_12600, G1X76_11625, G1X80_11625, G1X84_19410, G1X85_22430, G1X86_11055, G1X94_11480, G1X96_11060, G1X99_12285, G1Y02_11655
Chain IDs:A, B, C, D
Chain Length:314
Number of Molecules:4
Biological Source:Salmonella typhimurium (strain SL1344)
Ligand Molecules
Primary Citation
Salmonella Effectors SseK1 and SseK3 Target Death Domain Proteins in the TNF and TRAIL Signaling Pathways.
Mol.Cell Proteomics 18 1138 1156 (2019)
PMID: 30902834 DOI: 10.1074/mcp.RA118.001093

Abstact

Strains of Salmonella utilize two distinct type three secretion systems to deliver effector proteins directly into host cells. The Salmonella effectors SseK1 and SseK3 are arginine glycosyltransferases that modify mammalian death domain containing proteins with N-acetyl glucosamine (GlcNAc) when overexpressed ectopically or as recombinant protein fusions. Here, we combined Arg-GlcNAc glycopeptide immunoprecipitation and mass spectrometry to identify host proteins GlcNAcylated by endogenous levels of SseK1 and SseK3 during Salmonella infection. We observed that SseK1 modified the mammalian signaling protein TRADD, but not FADD as previously reported. Overexpression of SseK1 greatly broadened substrate specificity, whereas ectopic co-expression of SseK1 and TRADD increased the range of modified arginine residues within the death domain of TRADD. In contrast, endogenous levels of SseK3 resulted in modification of the death domains of receptors of the mammalian TNF superfamily, TNFR1 and TRAILR, at residues Arg376 and Arg293 respectively. Structural studies on SseK3 showed that the enzyme displays a classic GT-A glycosyltransferase fold and binds UDP-GlcNAc in a narrow and deep cleft with the GlcNAc facing the surface. Together our data suggest that salmonellae carrying sseK1 and sseK3 employ the glycosyltransferase effectors to antagonise different components of death receptor signaling.

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Primary Citation of related structures