6CEP image
Deposition Date 2018-02-12
Release Date 2018-06-27
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6CEP
Keywords:
Title:
Sus scrofa heart L-lactate dehydrogenase ternary complex with NADH and oxamate
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L-lactate dehydrogenase B chain
Gene (Uniprot):LDHB
Chain IDs:A, B, C, D
Chain Length:334
Number of Molecules:4
Biological Source:Sus scrofa
Primary Citation
Small molecule cores demonstrate non-competitive inhibition of lactate dehydrogenase.
Medchemcomm 9 1369 1376 (2018)
PMID: 30151092 DOI: 10.1039/c8md00309b

Abstact

Lactate dehydrogenase (LDH) has recently garnered attention as an attractive target for cancer therapies, owing to the enzyme's critical role in cellular metabolism. Current inhibition strategies, employing substrate or cofactor analogues, are insufficiently specific for use as pharmaceutical agents. The possibility of allosteric inhibition of LDH was postulated on the basis of theoretical docking studies of a small molecule inhibitor to LDH. The present study examined structural analogues of this proposed inhibitor to gauge its potency and attempt to elucidate the molecular mechanism of action. These analogues display encouraging in vitro inhibition of porcine heart LDH, including micromolar Ki values and a maximum inhibition of up to 50% in the steady state. Furthermore, Michaelis-Menten kinetics and fluorescence data both suggest the simple, acetaminophen derivatives are non-competitive in binding to the enzyme. Kinetic comparisons of a panel of increasingly decorated structural analogues imply that the binding is specific, and the small molecule core provides a privileged scaffold for further pharmaceutical development of a novel, allosteric drug.

Legend

Protein

Chemical

Disease

Primary Citation of related structures