6CE0 image
Deposition Date 2018-02-09
Release Date 2018-12-05
Last Version Date 2024-12-25
Entry Detail
PDB ID:
6CE0
Title:
Crystal structure of a HIV-1 clade B tier-3 isolate H078.14 UFO-BG Env trimer in complex with broadly neutralizing Fabs PGT124 and 35O22 at 4.6 Angstrom
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.60 Å
R-Value Free:
0.34
R-Value Work:
0.31
R-Value Observed:
0.31
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env, env
Mutations:T602C,T602C,T602C,T602C
Chain IDs:A (auth: B)
Chain Length:140
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:35O22 Heavy chain
Chain IDs:C (auth: D)
Chain Length:243
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:35O22 Light chain
Chain IDs:D (auth: E)
Chain Length:216
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Mutations:C500A
Chain IDs:B (auth: G)
Chain Length:487
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:PGT124 Heavy chain
Chain IDs:E (auth: H)
Chain Length:236
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:PGT124 Light chain
Chain IDs:F (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
HIV-1 vaccine design through minimizing envelope metastability.
Sci Adv 4 eaau6769 eaau6769 (2018)
PMID: 30474059 DOI: 10.1126/sciadv.aau6769

Abstact

Overcoming envelope metastability is crucial to trimer-based HIV-1 vaccine design. Here, we present a coherent vaccine strategy by minimizing metastability. For 10 strains across five clades, we demonstrate that the gp41 ectodomain (gp41ECTO) is the main source of envelope metastability by replacing wild-type gp41ECTO with BG505 gp41ECTO of the uncleaved prefusion-optimized (UFO) design. These gp41ECTO-swapped trimers can be produced in CHO cells with high yield and high purity. The crystal structure of a gp41ECTO-swapped trimer elucidates how a neutralization-resistant tier 3 virus evades antibody recognition of the V2 apex. UFO trimers of transmitted/founder viruses and UFO trimers containing a consensus-based ancestral gp41ECTO suggest an evolutionary root of metastability. The gp41ECTO-stabilized trimers can be readily displayed on 24- and 60-meric nanoparticles, with incorporation of additional T cell help illustrated for a hyperstable 60-mer, I3-01. In mice and rabbits, these gp140 nanoparticles induced tier 2 neutralizing antibody responses more effectively than soluble trimers.

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