6CBD image
Deposition Date 2018-02-02
Release Date 2018-04-18
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6CBD
Title:
Crystal Structure of Human Argonaute2 Bound to Three Tryptophans
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein argonaute-2
Gene (Uniprot):AGO2
Mutagens:S387D
Chain IDs:A
Chain Length:859
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:Guide RNA
Chain IDs:B
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polyribonucleotide
Molecule:Target RNA
Chain IDs:C
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Phase Transitions in the Assembly and Function of Human miRISC.
Cell 173 946 ? (2018)
PMID: 29576456 DOI: 10.1016/j.cell.2018.02.051

Abstact

miRISC is a multi-protein assembly that uses microRNAs (miRNAs) to identify mRNAs targeted for repression. Dozens of miRISC-associated proteins have been identified, and interactions between many factors have been examined in detail. However, the physical nature of the complex remains unknown. Here, we show that two core protein components of human miRISC, Argonaute2 (Ago2) and TNRC6B, condense into phase-separated droplets in vitro and in live cells. Phase separation is promoted by multivalent interactions between the glycine/tryptophan (GW)-rich domain of TNRC6B and three evenly spaced tryptophan-binding pockets in the Ago2 PIWI domain. miRISC droplets formed in vitro recruit deadenylation factors and sequester target RNAs from the bulk solution. The condensation of miRISC is accompanied by accelerated deadenylation of target RNAs bound to Ago2. The combined results may explain how miRISC silences mRNAs of varying size and structure and provide experimental evidence that protein-mediated phase separation can facilitate an RNA processing reaction.

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Primary Citation of related structures
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