6CA6 image
Deposition Date 2018-01-29
Release Date 2018-06-27
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6CA6
Keywords:
Title:
Crystal structure of PCT64_35S, a broadly neutralizing anti-HIV antibody.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.43 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PCT64_35S heavy chain
Chain IDs:B (auth: H), D (auth: B)
Chain Length:238
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:PCT64_35S light chain
Chain IDs:A (auth: L), C (auth: A)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design.
Cell Rep 23 3249 3261 (2018)
PMID: 29898396 DOI: 10.1016/j.celrep.2018.05.046

Abstact

Broadly neutralizing antibodies (bnAbs) targeting the HIV envelope glycoprotein (Env) typically take years to develop. Longitudinal analyses of both neutralizing antibody lineages and viruses at serial time points during infection provide a basis for understanding the co-evolutionary contest between HIV and the humoral immune system. Here, we describe the structural characterization of an apex-targeting antibody lineage and autologous clade A viral Env from a donor in the Protocol C cohort. Comparison of Ab-Env complexes at early and late time points reveals that, within the antibody lineage, the CDRH3 loop rigidifies, the bnAb angle of approach steepens, and surface charges are mutated to accommodate glycan changes. Additionally, we observed differences in site-specific glycosylation between soluble and full-length Env constructs, which may be important for tuning optimal immunogenicity in soluble Env trimers. These studies therefore provide important guideposts for design of immunogens that prime and mature nAb responses to the Env V2-apex.

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