6C9U image
Deposition Date 2018-01-28
Release Date 2018-05-23
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6C9U
Title:
Crystal structure of [KS3][AT3] didomain from module 3 of 6-deoxyerthronolide B synthase in complex with antibody fragment (Fab)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.09 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:6-deoxyerythronolide-B synthase EryA2, modules 3 and 4
Gene (Uniprot):eryA
Chain IDs:A
Chain Length:941
Number of Molecules:1
Biological Source:Saccharopolyspora erythraea
Polymer Type:polypeptide(L)
Molecule:Heavy chain of Fab 1B2
Chain IDs:C (auth: H)
Chain Length:249
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain of Fab 1B2
Chain IDs:B (auth: L)
Chain Length:236
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSD A CYS modified residue
Primary Citation
Structure-Function Analysis of the Extended Conformation of a Polyketide Synthase Module.
J. Am. Chem. Soc. 140 6518 6521 (2018)
PMID: 29762030 DOI: 10.1021/jacs.8b02100

Abstact

Catalytic modules of assembly-line polyketide synthases (PKSs) have previously been observed in two very different conformations-an "extended" architecture and an "arch-shaped" architecture-although the catalytic relevance of neither has been directly established. By the use of a fully human naïve antigen-binding fragment (Fab) library, a high-affinity antibody was identified that bound to the extended conformation of a PKS module, as verified by X-ray crystallography and tandem size-exclusion chromatography-small-angle X-ray scattering (SEC-SAXS). Kinetic analysis proved that this antibody-stabilized module conformation was fully competent for catalysis of intermodular polyketide chain translocation as well as intramodular polyketide chain elongation and functional group modification of a growing polyketide chain. Thus, the extended conformation of a PKS module is fully competent for all of its essential catalytic functions.

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Primary Citation of related structures