6C7N image
Deposition Date 2018-01-23
Release Date 2019-01-30
Last Version Date 2023-11-15
Entry Detail
PDB ID:
6C7N
Keywords:
Title:
Monoclinic form of malic enzyme from sorghum at 2 angstroms resolution
Biological Source:
Source Organism:
Sorghum bicolor (Taxon ID: 4558)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Malic enzyme
Gene (Uniprot):SORBI_3003G036200
Chain IDs:A, B, C, D
Chain Length:613
Number of Molecules:4
Biological Source:Sorghum bicolor
Primary Citation
Molecular adaptations of NADP-malic enzyme for its function in C4photosynthesis in grasses.
Nat.Plants 5 755 765 (2019)
PMID: 31235877 DOI: 10.1038/s41477-019-0451-7

Abstact

In C4 grasses of agronomical interest, malate shuttled into the bundle sheath cells is decarboxylated mainly by nicotinamide adenine dinucleotide phosphate (NADP)-malic enzyme (C4-NADP-ME). The activity of C4-NADP-ME was optimized by natural selection to efficiently deliver CO2 to Rubisco. During its evolution from a plastidic non-photosynthetic NADP-ME, C4-NADP-ME acquired increased catalytic efficiency, tetrameric structure and pH-dependent inhibition by its substrate malate. Here, we identified specific amino acids important for these C4 adaptions based on strict differential conservation of amino acids, combined with solving the crystal structures of maize and sorghum C4-NADP-ME. Site-directed mutagenesis and structural analyses show that Q503, L544 and E339 are involved in catalytic efficiency; E339 confers pH-dependent regulation by malate, F140 is critical for the stabilization of the oligomeric structure and the N-terminal region is involved in tetramerization. Together, the identified molecular adaptations form the basis for the efficient catalysis and regulation of one of the central biochemical steps in C4 metabolism.

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Primary Citation of related structures