6C62 image
Deposition Date 2018-01-17
Release Date 2018-03-21
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6C62
Keywords:
Title:
An unexpected vestigial protein complex reveals the evolutionary origins of an s-triazine catabolic enzyme.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Biuret hydrolase
Gene (Uniprot):atzE
Chain IDs:A, B
Chain Length:457
Number of Molecules:2
Biological Source:Pseudomonas sp. (strain ADP)
Polymer Type:polypeptide(L)
Molecule:AtzG
Chain IDs:C, D
Chain Length:68
Number of Molecules:2
Biological Source:Pseudomonas sp. (strain ADP)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSO A CYS modified residue
Ligand Molecules
Primary Citation
An unexpected vestigial protein complex reveals the evolutionary origins of ans-triazine catabolic enzyme.
J. Biol. Chem. 293 7880 7891 (2018)
PMID: 29523689 DOI: 10.1074/jbc.RA118.001996

Abstact

Cyanuric acid is a metabolic intermediate of s-triazines, such as atrazine (a common herbicide) and melamine (used in resins and plastics). Cyanuric acid is mineralized to ammonia and carbon dioxide by the soil bacterium Pseudomonas sp. strain ADP via three hydrolytic enzymes (AtzD, AtzE, and AtzF). Here, we report the purification and biochemical and structural characterization of AtzE. Contrary to previous reports, we found that AtzE is not a biuret amidohydrolase, but instead it catalyzes the hydrolytic deamination of 1-carboxybiuret. X-ray crystal structures of apo AtzE and AtzE bound with the suicide inhibitor phenyl phosphorodiamidate revealed that the AtzE enzyme complex consists of two independent molecules in the asymmetric unit. We also show that AtzE forms an α2β2 heterotetramer with a previously unidentified 68-amino acid-long protein (AtzG) encoded in the cyanuric acid mineralization operon from Pseudomonas sp. strain ADP. Moreover, we observed that AtzG is essential for the production of soluble, active AtzE and that this obligate interaction is a vestige of their shared evolutionary origin. We propose that AtzEG was likely recruited into the cyanuric acid-mineralizing pathway from an ancestral glutamine transamidosome that required protein-protein interactions to enforce the exclusion of solvent from the transamidation reaction.

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Primary Citation of related structures