6C4Y image
Deposition Date 2018-01-13
Release Date 2018-08-15
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6C4Y
Keywords:
Title:
Cross-alpha Amyloid-like Structure alphaAmG
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 43 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cross-alpha Amyloid-like Structure alphaAmG
Chain IDs:A, B, C, D, E, F, G, H, I (auth: K), J (auth: I), K (auth: J), L, M, N, O, P, Q, R
Chain Length:27
Number of Molecules:18
Biological Source:synthetic construct
Primary Citation
Designed peptides that assemble into cross-alpha amyloid-like structures.
Nat. Chem. Biol. 14 870 875 (2018)
PMID: 30061717 DOI: 10.1038/s41589-018-0105-5

Abstact

Amyloids adopt 'cross-β' structures composed of long, twisted fibrils with β-strands running perpendicular to the fibril axis. Recently, a toxic peptide was proposed to form amyloid-like cross-α structures in solution, with a planar bilayer-like assembly observed in the crystal structure. Here we crystallographically characterize designed peptides that assemble into spiraling cross-α amyloid-like structures, which resemble twisted β-amyloid fibrils. The peptides form helical dimers, stabilized by packing of small and apolar residues, and the dimers further assemble into cross-α amyloid-like fibrils with superhelical pitches ranging from 170 Å to 200 Å. When a small residue that appeared critical for packing was converted to leucine, it resulted in structural rearrangement to a helical polymer. Fluorescently tagged versions of the designed peptides form puncta in mammalian cells, which recover from photobleaching with markedly different kinetics. These structural folds could be potentially useful for directing in vivo protein assemblies with predetermined spacing and stabilities.

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