6C4C image
Deposition Date 2018-01-11
Release Date 2018-06-06
Last Version Date 2023-11-15
Entry Detail
PDB ID:
6C4C
Keywords:
Title:
Crystal structure of 3-nitropropionate modified isocitrate lyase from Mycobacterium tuberculosis with glyoxylate and pyruvate
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Isocitrate lyase 1
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:442
Number of Molecules:8
Biological Source:Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
EJA A CYS modified residue
Primary Citation
The Nitro Group as a Masked Electrophile in Covalent Enzyme Inhibition.
ACS Chem. Biol. 13 1470 1473 (2018)
PMID: 29782144 DOI: 10.1021/acschembio.8b00225

Abstact

We report the unprecedented reaction between a nitroalkane and an active-site cysteine residue to yield a thiohydroximate adduct. Structural and kinetic evidence suggests the nitro group is activated by conversion to its nitronic acid tautomer within the active site. The nitro group, therefore, shows promise as a masked electrophile in the design of covalent inhibitors targeting binding pockets with appropriately placed cysteine and general acid residues.

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Primary Citation of related structures
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