6C1Z image
Deposition Date 2018-01-05
Release Date 2019-01-09
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6C1Z
Title:
Crystal structure of Apo Caenorhabditis elegans lipid binding protein 8 (LBP-8)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lipid Binding Protein
Gene (Uniprot):lbp-8
Chain IDs:A
Chain Length:138
Number of Molecules:1
Biological Source:Caenorhabditis elegans
Ligand Molecules
Primary Citation
Structural characterization of life-extending Caenorhabditis elegans Lipid Binding Protein 8.
Sci Rep 9 9966 9966 (2019)
PMID: 31292465 DOI: 10.1038/s41598-019-46230-8

Abstact

The lysosome plays a crucial role in the regulation of longevity. Lysosomal degradation is tightly coupled with autophagy that is induced by many longevity paradigms and required for lifespan extension. The lysosome also serves as a hub for signal transduction and regulates longevity via affecting nuclear transcription. One lysosome-to-nucleus retrograde signaling pathway is mediated by a lysosome-associated fatty acid binding protein LBP-8 in Caenorhabditis elegans. LBP-8 shuttles lysosomal lipids into the nucleus to activate lipid regulated nuclear receptors NHR-49 and NHR-80 and consequently promote longevity. However, the structural basis of LBP-8 action remains unclear. Here, we determined the first 1.3 Å high-resolution structure of this life-extending protein LBP-8, which allowed us to identify a structurally conserved nuclear localization signal and amino acids involved in lipid binding. Additionally, we described the range of fatty acids LBP-8 is capable of binding and show that it binds to life-extending ligands in worms such as oleic acid and oleoylethanolamide with high affinity.

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Protein

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Disease

Primary Citation of related structures