6BYN image
Deposition Date 2017-12-21
Release Date 2018-07-04
Last Version Date 2023-10-04
Entry Detail
PDB ID:
6BYN
Keywords:
Title:
Crystal structure of WDR5-Mb(S4) monobody complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.69 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:WDR5-binding Monobody, Mb(S4)
Chain IDs:B (auth: M)
Chain Length:98
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:WD repeat-containing protein 5
Gene (Uniprot):WDR5
Chain IDs:A (auth: W)
Chain Length:306
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Facile target validation in an animal model with intracellularly expressed monobodies.
Nat. Chem. Biol. 14 895 900 (2018)
PMID: 30013062 DOI: 10.1038/s41589-018-0099-z

Abstact

Rapidly determining the biological effect of perturbing a site within a potential drug target could guide drug discovery efforts, but it remains challenging. Here, we describe a facile target validation approach that exploits monobodies, small synthetic binding proteins that can be fully functionally expressed in cells. We developed a potent and selective monobody to WDR5, a core component of the mixed lineage leukemia (MLL) methyltransferase complex. The monobody bound to the MLL interaction site of WDR5, the same binding site for small-molecule inhibitors whose efficacy has been demonstrated in cells but not in animals. As a genetically encoded reagent, the monobody inhibited proliferation of an MLL-AF9 cell line in vitro, suppressed its leukemogenesis and conferred a survival benefit in an in vivo mouse leukemia model. The capacity of this approach to readily bridge biochemical, structural, cellular characterization and tests in animal models may accelerate discovery and validation of druggable sites.

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