6BWV image
Deposition Date 2017-12-15
Release Date 2018-05-09
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6BWV
Keywords:
Title:
Crystal Structure of the 4-1BB/4-1BBL Complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
I 21 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tumor necrosis factor ligand superfamily member 9
Gene (Uniprot):TNFSF9
Chain IDs:A, B
Chain Length:156
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Tumor necrosis factor receptor superfamily member 9
Gene (Uniprot):TNFRSF9
Mutations:C121S, N138D, N149Q
Chain IDs:C (auth: D), D (auth: E)
Chain Length:141
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Crystal structure of the human 4-1BB/4-1BBL complex.
J. Biol. Chem. 293 9880 9891 (2018)
PMID: 29720399 DOI: 10.1074/jbc.RA118.002803

Abstact

4-1BBL is a member of the tumor necrosis factor (TNF) superfamily and is the ligand for the TNFR superfamily receptor, 4-1BB. 4-1BB plays an immunomodulatory role in T cells and NK cells, and agonists of this receptor have garnered strong attention as potential immunotherapy agents. Broadly speaking, the structural features of TNF superfamily members, their receptors, and ligand-receptor complexes are similar. However, a published crystal structure of human 4-1BBL suggests that it may be unique in this regard, exhibiting a three-bladed propeller-like trimer assembly that is distinctly different from that observed in other family members. This unusual structure also suggests that the human 4-1BB/4-1BBL complex may be structurally unique within the TNF/TNFR superfamily, but to date no structural data have been reported. Here we report the crystal structure of the human 4-1BB/4-1BBL complex at 2.4-Å resolution. In this structure, 4-1BBL does not adopt the unusual trimer assembly previously reported, but instead forms a canonical bell-shaped trimer typical of other TNF superfamily members. The structure of 4-1BB is also largely canonical as is the 4-1BB/4-1BBL complex. Mutational data support the 4-1BBL structure reported here as being biologically relevant, suggesting that the previously reported structure is not. Together, the data presented here offer insight into structure/function relationships in the 4-1BB/4-1BBL system and improve our structural understanding of the TNF/TNFR superfamily more broadly.

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Primary Citation of related structures