6BWH image
Entry Detail
PDB ID:
6BWH
Keywords:
Title:
Crystal structure of Mycoibacterium tuberculosis Rv2983 in complex with PEP
Biological Source:
PDB Version:
Deposition Date:
2017-12-15
Release Date:
2018-12-19
Method Details:
Experimental Method:
Resolution:
2.18 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:2-phospho-L-lactate guanylyltransferase
Chain IDs:A, B, C
Chain Length:228
Number of Molecules:3
Biological Source:Mycobacterium tuberculosis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
A revised biosynthetic pathway for the cofactor F420in prokaryotes.
Nat Commun 10 1558 1558 (2019)
PMID: 30952857 DOI: 10.1038/s41467-019-09534-x

Abstact

Cofactor F420 plays critical roles in primary and secondary metabolism in a range of bacteria and archaea as a low-potential hydride transfer agent. It mediates a variety of important redox transformations involved in bacterial persistence, antibiotic biosynthesis, pro-drug activation and methanogenesis. However, the biosynthetic pathway for F420 has not been fully elucidated: neither the enzyme that generates the putative intermediate 2-phospho-L-lactate, nor the function of the FMN-binding C-terminal domain of the γ-glutamyl ligase (FbiB) in bacteria are known. Here we present the structure of the guanylyltransferase FbiD and show that, along with its archaeal homolog CofC, it accepts phosphoenolpyruvate, rather than 2-phospho-L-lactate, as the substrate, leading to the formation of the previously uncharacterized intermediate dehydro-F420-0. The C-terminal domain of FbiB then utilizes FMNH2 to reduce dehydro-F420-0, which produces mature F420 species when combined with the γ-glutamyl ligase activity of the N-terminal domain. These new insights have allowed the heterologous production of F420 from a recombinant F420 biosynthetic pathway in Escherichia coli.

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Primary Citation of related structures