6BTC image
Deposition Date 2017-12-06
Release Date 2018-07-25
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6BTC
Title:
SCCmec type IV LP1413 - nucleic acids binding protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.18 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:LP1413 - SCCmec type IV-encoded DNA binding protein
Gene (Uniprot):EQ90_14520, GO814_14835, GO942_10660, LB359_13580, R114_18, R15_21, R17_21, R92_18, R95_21, R99_21
Chain IDs:A, B
Chain Length:96
Number of Molecules:2
Biological Source:Staphylococcus aureus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
Crystal Structure of an Unusual Single-Stranded DNA-Binding Protein Encoded by Staphylococcal Cassette Chromosome Elements.
Structure 26 1144 ? (2018)
PMID: 30017563 DOI: 10.1016/j.str.2018.05.016

Abstact

Methicillin-resistant Staphylococcus aureus is a global public health threat. Methicillin resistance is carried on mobile genetic elements belonging to the staphylococcal cassette chromosome (SCC) family. The molecular mechanisms that SCC elements exploit for stable maintenance and for horizontal transfer are poorly understood. Previously, we identified several conserved SCC genes with putative functions in DNA replication, including lp1413, which we found encodes a single-stranded DNA (ssDNA)-binding protein. We report here the 2.18 Å crystal structure of LP1413, which shows that it adopts a winged helix-turn-helix fold rather than the OB-fold normally seen in replication-related ssDNA-binding proteins. However, conserved residues form a hydrophobic pocket not normally found in winged helix-turn-helix domains. LP1413 also has a conserved but disordered C-terminal tail. As deletion of the tail does not significantly affect cooperative binding to ssDNA, we propose that it mediates interactions with other proteins. LP1413 could play several different roles in vivo.

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Primary Citation of related structures