6BR5 image
Deposition Date 2017-11-30
Release Date 2018-03-07
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6BR5
Title:
N2 neuraminidase in complex with a novel antiviral compound
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.04 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 4 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neuraminidase
Chain IDs:A
Chain Length:387
Number of Molecules:1
Biological Source:Influenza A virus
Primary Citation
A Sulfonozanamivir Analogue Has Potent Anti-influenza Virus Activity.
ChemMedChem 13 785 789 (2018)
PMID: 29453852 DOI: 10.1002/cmdc.201800092

Abstact

Influenza virus infection continues to cause significant, often severe, respiratory illness worldwide. A validated target for the development of anti-influenza agents is the virus surface protein sialidase. In the current study, we have discovered a highly potent inhibitor of influenza virus sialidase, based on a novel sialosyl sulfonate template. The synthesised 3-guanidino sialosyl alpha-sulfonate, a sulfonozanamivir analogue, inhibits viral replication in vitro at the nanomolar level, comparable to that of the anti-influenza drug zanamivir. Using protein X-ray crystallography we show that the sialosyl alpha-sulfonate template binds within the sialidase active site in a (1) C(4) chair conformation. The C1-sulfonate moiety forms crucial and strong-binding interactions with the active site's triarginyl cluster, while the 3-guanidino moiety interacts significantly with conserved active site residues. This sulfonozanamivir analogue provides a new direction in anti-influenza virus drug development.

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Primary Citation of related structures
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