6BKQ image
Deposition Date 2017-11-09
Release Date 2018-02-28
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6BKQ
Keywords:
Title:
Crystal structure of the A/Hong Kong/1/1968 (H3N2) influenza virus hemagglutinin E190D mutant in complex with 6'-SLN
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Mutations:E190D
Chain IDs:A, C, E
Chain Length:323
Number of Molecules:3
Biological Source:Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:B, D, F
Chain Length:174
Number of Molecules:3
Biological Source:Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
Primary Citation
A complex epistatic network limits the mutational reversibility in the influenza hemagglutinin receptor-binding site.
Nat Commun 9 1264 1264 (2018)
PMID: 29593268 DOI: 10.1038/s41467-018-03663-5

Abstact

The hemagglutinin (HA) receptor-binding site (RBS) in human influenza A viruses is critical for attachment to host cells, which imposes a functional constraint on its natural evolution. On the other hand, being part of the major antigenic sites, the HA RBS of human H3N2 viruses needs to constantly mutate to evade the immune system. From large-scale mutagenesis experiments, we here show that several of the natural RBS substitutions become integrated into an extensive epistatic network that prevents substitution reversion. X-ray structural analysis reveals the mechanistic consequences as well as changes in the mode of receptor binding. Further studies are necessary to elucidate whether such entrenchment limits future options for immune escape or adversely affect long-term viral fitness.

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