6BKD image
Deposition Date 2017-11-08
Release Date 2018-12-26
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6BKD
Keywords:
Title:
Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 6a bound to broadly neutralizing antibody AR3D
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.25 Å
R-Value Free:
0.28
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Polyprotein
Mutations:N448D
Chain IDs:A (auth: E)
Chain Length:189
Number of Molecules:1
Biological Source:Recombinant Hepatitis C virus HK6a/JFH-1
Polymer Type:polypeptide(L)
Molecule:Fab AR3D heavy chain
Chain IDs:B (auth: H)
Chain Length:234
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab AR3D light chain
Gene (Uniprot):IGK@
Chain IDs:C (auth: L)
Chain Length:212
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Genetic and structural insights into broad neutralization of hepatitis C virus by human VH1-69 antibodies.
Sci Adv 5 eaav1882 eaav1882 (2019)
PMID: 30613781 DOI: 10.1126/sciadv.aav1882

Abstact

An effective vaccine to the antigenically diverse hepatitis C virus (HCV) must target conserved immune epitopes. Here, we investigate cross-neutralization of HCV genotypes by broadly neutralizing antibodies (bNAbs) encoded by the relatively abundant human gene family V H 1-69. We have deciphered the molecular requirements for cross-neutralization by this unique class of human antibodies from crystal structures of HCV E2 in complex with bNAbs. An unusually high binding affinity is found for germ line-reverted versions of VH1-69 precursor antibodies, and neutralization breadth is acquired during affinity maturation. Deep sequencing analysis of an HCV-immune B cell repertoire further demonstrates the importance of the V H 1-69 gene family in the generation of HCV bNAbs. This study therefore provides critical insights into immune recognition of HCV with important implications for rational vaccine design.

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Primary Citation of related structures