6BK5 image
Deposition Date 2017-11-07
Release Date 2018-03-14
Last Version Date 2024-03-13
Entry Detail
PDB ID:
6BK5
Title:
Inactive choanoflagellate E3 ubiquitin ligase Cbl TKB
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin Ligase Cbl
Gene (Uniprot):PTSG_09506
Chain IDs:A
Chain Length:349
Number of Molecules:1
Biological Source:Salpingoeca rosetta (strain ATCC 50818 / BSB-021)
Ligand Molecules
Primary Citation
Phosphorylation control of the ubiquitin ligase Cbl is conserved in choanoflagellates.
Protein Sci. 27 923 932 (2018)
PMID: 29498112 DOI: 10.1002/pro.3397

Abstact

Cbl proteins are E3 ubiquitin ligases specialized for the regulation of tyrosine kinases by ubiquitylation. Human Cbl proteins are activated by tyrosine phosphorylation, thus setting up a feedback loop whereby the activation of tyrosine kinases triggers their own degradation. Cbl proteins are targeted to their substrates by a phosphotyrosine-binding SH2 domain. Choanoflagellates, unicellular eukaryotes that are closely related to metazoans, also contain Cbl. The tyrosine kinase complement of choanoflagellates is distinct from that of metazoans, and it is unclear if choanoflagellate Cbl is regulated similarly to metazoan Cbl. Here, we performed structure-function studies on Cbl from the choanoflagellate species Salpingoeca rosetta and found that it undergoes phosphorylation-dependent activation. We show that S. rosetta Cbl can be phosphorylated by S. rosetta Src kinase, and that it can ubiquitylate S. rosetta Src. We also compared the substrate selectivity of human and S. rosetta Cbl by measuring ubiquitylation of Src constructs in which Cbl-recruitment sites are placed in different contexts with respect to the kinase domain. Our results indicate that for both human and S. rosetta Cbl, ubiquitylation depends on proximity and accessibility, rather than being targeted toward specific lysine residues. Our results point to an ancient interplay between phosphotyrosine and ubiquitin signaling in the metazoan lineage.

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Primary Citation of related structures