6BI4 image
Deposition Date 2017-10-31
Release Date 2017-11-08
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6BI4
Keywords:
Title:
2.9 Angstrom Resolution Crystal Structure of dTDP-Glucose 4,6-dehydratase (rfbB) from Bacillus anthracis str. Ames in Complex with NAD.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.91 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
I 4 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:dTDP-glucose 4,6-dehydratase
Chain IDs:A, B, C, D
Chain Length:346
Number of Molecules:4
Biological Source:Bacillus anthracis str. Ames
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Peptide-like Molecules
PRD_900003
Primary Citation
Structure of the Bacillus anthracis dTDP-l-rhamnose biosynthetic pathway enzyme: dTDP-alpha-d-glucose 4,6-dehydratase, RfbB.
J.Struct.Biol. 202 175 181 (2018)
PMID: 29331609 DOI: 10.1016/j.jsb.2018.01.006

Abstact

Many bacteria require l-rhamnose as a key cell wall component. This sugar is transferred to the cell wall using an activated donor dTDP-l-rhamnose, which is produced by the dTDP-l-rhamnose biosynthetic pathway. We determined the crystal structure of the second enzyme of this pathway dTDP-α-d-glucose 4,6-dehydratase (RfbB) from Bacillus anthracis. Interestingly, RfbB only crystallized in the presence of the third enzyme of the pathway RfbC; however, RfbC was not present in the crystal. Our work represents the first complete structural characterization of the four proteins of this pathway in a single Gram-positive bacterium.

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