6BI0 image
Deposition Date 2017-10-31
Release Date 2018-02-14
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6BI0
Keywords:
Title:
Trastuzumab Fab N158A, D185A, K190A (Light Chain) Triple Mutant.
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.06 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Trastuzumab anti-HER2 Fab Heavy Chain
Chain IDs:A (auth: H), C (auth: I)
Chain Length:225
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Trastuzumab anti-HER2 Fab Light Chain
Mutations:N158A, D185A, K190A
Chain IDs:B (auth: L), D (auth: M)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Tuning a Protein-Labeling Reaction to Achieve Highly Site Selective Lysine Conjugation.
Chembiochem 19 799 804 (2018)
PMID: 29388367 DOI: 10.1002/cbic.201700611

Abstact

Activated esters are widely used to label proteins at lysine side chains and N termini. These reagents are useful for labeling virtually any protein, but robust reactivity toward primary amines generally precludes site-selective modification. In a unique case, fluorophenyl esters are shown to preferentially label human kappa antibodies at a single lysine (Lys188) within the light-chain constant domain. Neighboring residues His189 and Asp151 contribute to the accelerated rate of labeling at Lys188 relative to the ≈40 other lysine sites. Enriched Lys188 labeling can be enhanced from 50-70 % to >95 % by any of these approaches: lowering reaction temperature, applying flow chemistry, or mutagenesis of specific residues in the surrounding protein environment. Our results demonstrated that activated esters with fluoro-substituted aromatic leaving groups, including a fluoronaphthyl ester, can be generally useful reagents for site-selective lysine labeling of antibodies and other immunoglobulin-type proteins.

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Primary Citation of related structures