6BHS image
Deposition Date 2017-10-31
Release Date 2018-08-01
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6BHS
Keywords:
Title:
HIV-1 CA hexamer in complex with IP6, hexagonal crystal form
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.98 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 6
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Capsid protein p24
Gene (Uniprot):gag
Mutations:A146C, E177C, W316A, M317A
Chain IDs:A
Chain Length:231
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1 group M subtype B (isolate NY5)
Ligand Molecules
Primary Citation
Inositol phosphates are assembly co-factors for HIV-1.
Nature 560 509 512 (2018)
PMID: 30069050 DOI: 10.1038/s41586-018-0396-4

Abstact

A short, 14-amino-acid segment called SP1, located in the Gag structural protein1, has a critical role during the formation of the HIV-1 virus particle. During virus assembly, the SP1 peptide and seven preceding residues fold into a six-helix bundle, which holds together the Gag hexamer and facilitates the formation of a curved immature hexagonal lattice underneath the viral membrane2,3. Upon completion of assembly and budding, proteolytic cleavage of Gag leads to virus maturation, in which the immature lattice is broken down; the liberated CA domain of Gag then re-assembles into the mature conical capsid that encloses the viral genome and associated enzymes. Folding and proteolysis of the six-helix bundle are crucial rate-limiting steps of both Gag assembly and disassembly, and the six-helix bundle is an established target of HIV-1 inhibitors4,5. Here, using a combination of structural and functional analyses, we show that inositol hexakisphosphate (InsP6, also known as IP6) facilitates the formation of the six-helix bundle and assembly of the immature HIV-1 Gag lattice. IP6 makes ionic contacts with two rings of lysine residues at the centre of the Gag hexamer. Proteolytic cleavage then unmasks an alternative binding site, where IP6 interaction promotes the assembly of the mature capsid lattice. These studies identify IP6 as a naturally occurring small molecule that promotes both assembly and maturation of HIV-1.

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Primary Citation of related structures